Papers with Linking of biomedical entity mentions
Fair Evaluation in Concept Normalization: a Large-scale Comparative Analysis for BERT-based Models (2020.coling-main)
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| Challenge: | a large number of biomedical entity mentions are retrieved from different ontologies, requiring non-syntactic interpretation. |
| Approach: | They propose to use bidirectional encoder representations from transformers to link biomedical entities across three domains for a task called medical concept normalization. |
| Outcome: | The proposed neural architectures are efficient for linking biomedical entities across domains and corpora. |